Has the procedure for scheduled syncs changed? I've noticed mine do not seem to run since the recent update, and the FAQ now reads dfferently than your reply above:
6. How can I automatically synchronize a copy of a website on my Mac with the server every day?
ANSWER: You will need a Bookmark for your server. Connect to the server using the Bookmark, then select the Synchronize option when you have connected and navigated the file browsers to your Mac copy and server copy. After configuring the Synchronize as required (Update Server in this case) press the Schedule button and select the start time and repeat interval for the Schedule. You'll need to keep an FTP Browser open in order for the Schedule to execute, but to make this completely automated, set Yummy FTP set as a startup item, and enable the 'Connect automatically on startup' option in your Bookmark.
Is this due to Mac App Store rules?